PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G028353.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 501aa    MW: 55716.4 Da    PI: 6.2041
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G028353.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.5e-12309354454
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI +L
  HL.SW.v1.0.G028353.1 309 NHVEAERQRREKLNNRFYALRAVVPNV-----SRMDKASLLSDAVSYIDEL 354
                           799***********************6.....4***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.2E-5224209IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.837305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-17305370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.20E-13308358No hitNo description
PfamPF000107.6E-10309354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-16309368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-15311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MEDLMISPSS PSSLVSLSHE ATVLQQRLQL LLQSLTDWWA YAIFWQISND DAGRLFLKWG  60
DGHFHGLKHS TSSQAPFSGV LHVERRRILK DIQSLVRNDN VENHITDDVT TPNNGTDITD  120
AEWFYVMSLS RSFFAGEGVP GKALSSGSLV WLTGGHELQF YNCDRANDAH LHGIETLVCI  180
PTSCGVLELG SSEIIRENWG LVQQAKSLFG TDPNPIQFVR RNLSFADIGI TAGVREEDDT  240
NNHSTKETTT LALMKTARKE VLHGPNSIYP ESDHSDSISD CPLVVADVNK RLPKKRGRKP  300
GLGRDTPLNH VEAERQRREK LNNRFYALRA VVPNVSRMDK ASLLSDAVSY IDELKTKIND  360
LESQLVQRDQ TNNNHNKRVK IEMADNSLDN QSTTTSVDQT RPNHSNNSSG SPSADEDGGV  420
GIELDVKIVG TDAMIRVQSE NENYPAARLM GALRELEFQI HHASVSTIND LMLQDVVVKV  480
ADQRMRNDHH ALKAAILARF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-35242099192Transcription factor MYC3
4rqw_B8e-35242099192Transcription factor MYC3
4rs9_A8e-35242099192Transcription factor MYC3
4yz6_A8e-35242099192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010100678.10.0hypothetical protein L484_023447
TrEMBLW9RDL10.0W9RDL1_9R
STRINGPOPTR_0002s17750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.18e-66bHLH family protein